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PROGRAM
COORDINATOR

Louise Pape
425 Henry Mall Rm 3445
Madison, WI 53706
Phone: 608-265-7935
Fax: 608-265-9485
lpape@wisc.edu

PROGRAM
ADMINISTRATOR

Karen Nafzger
425 Henry Mall Rm 3420
Madison, WI 53706
Phone: 608-262-4366
Fax: 608-265-9485
nafzger@biotech.wisc.edu

 

CIBM RETREAT

The 2014 CIBM Training Program Annual Retreat will be held Friday, October 17, 2014 at The Pyle Center, 702 Langdon Street, University of Wisconsin-Madison campus. Please save the date.

Past CIBM Retreats

The 2013 Fall CIBM Training Program Retreat was held Friday, October 11, 2013 at The Pyle Center, 702 Langdon Street, University of Wisconsin-Madison campus.

9:00 a.m. Continental breakfast, Room 313

9:30 Welcome remarks; Introduction to CIBM Training Program

9:45-10:45 Keynote Speaker: Philip Resnik, PhD, Professor of Linguistics; University of Maryland Institute for Advanced Computer Studies; Affiliate Professor, Computer Science, University of Maryland, College Park, An Academic's Adventures with Clinical Natural Language Processing in the Real World

10:45-11:00 Mid Morning Beverages

11:00-12:00  Poster session I, Room 309

12:00-1:15 pm  Lunch, Alumni Lounge

1:15-2:15   UW Faculty Speaker Sunduz Keles, PhD, Associate Professor, Department of Statistics, University of Wisconsin-Madison, Integrative Analysis of *-seq Datasets for a Comprehensive Understanding of Regulatory Roles of Repetitive Regions

2:15-3:30    Poster Session II (Refreshments also served during poster session)

3:30-4:30   UW Alum Speaker: Paul Bradley, PhD, Chief Data Scientist, MethodCare, Mixture Modeling Applications to Population Health Management

5:00 p.m.  End of Program

 

The 2012 Fall CIBM Training Program Retreat was held Friday, October 12, 2012 at The Pyle Center, 702 Langdon Street, University of Wisconsin-Madison campus.

9:00 a.m. Continental breakfast, Room 313

9:30 Welcome remarks; Introduction to CIBM Training Program

9:45-10:45 Keynote Speaker: Simon Lin, MD, Director, Biomedical Informatics Research Center, Marshfield Clinic Research Foundation, Found in Translation: Pharmacogenomics

10:45-11:00 Mid Morning Beverages

11:00-12:00  Poster session I, Room 309

12:00-1:15 pm  Lunch

1:15-2:15   UW Alum Speaker: Nick Street, PhD, Professor and Department Executive Officer, Department of Management Sciences, Tippie College of Business, University of Iowa, Data Mining for Personalized Health Care Decision Making

2:15-3:30    Poster Session II (Refreshments also served during poster session)

3:30-4:30   Keynote Speaker: Patricia Flatley Brennan, PhD, Moehlman Bascom Professor, Department of Industrial and Systems Engineering; School of Nursing, UW-Madison; Living Environments Theme Leader, Wisconsin Institute for Discovery, Seeing Health in Every-Day Lives: Designing Informatics Solutions for Healthful Patient Centered Living

5:00 p.m.  End of Program

 

The 2011 Fall CIBM Training Program Retreat was held on Friday, October 7, 2011 at The Pyle Center, 702 Langdon Street, University of Wisconsin-Madison campus.

9:00 a.m. Continental breakfast, Room 313

9:30 Welcome remarks; Introduction to CIBM Training Program

9:45-10:45 UW Faculty Speaker: Eneida Mendonca, MD, PhD (Visiting Associate Professor, Biostatistics & Medical Informatics, University of Wisconsin School of Medicine and Public Health), Natural Language Understanding and the Clinical Environment

10:45-11:00 Mid Morning Beverages

11:00-12:00  Poster session I, Room 309

12:00-1:15 pm  Lunch

1:15-2:15   Keynote Speaker: Atul Butte, MD, PhD (Chief and Associate Professor of Systems Medicine and Pediatrics, Stanford University), Systems and Personalized Medicine

2:15-3:30    Poster Session II (Refreshments also served during poster session)

3:30-4:30   UW Alum Speaker: Christine Heitsch, PhD (Associate Professor, School of Mathematics, Georgia Institute of Technology), “RNA Folding Prediction: The Continued Need for Interaction between Biologists and Mathematicians”

5:00 p.m.  End of Program

 

Past speakers and the title of their presentation, as well as their affiliation, are listed below:

[2010]

Keynote Speaker: Latanya Sweeney, PhD, Distinguished Career Professor, Distinguished Career Professor, Computer Science, Technology and Policy, Institute for Software Research School of Computer Science, Carnegie Mellon University, Paradigms for Research Data on the Nationwide Health Information Network

UW Faculty Speaker: Michael Ferris, PhD, Professor, Computer Sciences; Industrial and Systems Engineering; Faculty Theme Leader, Optimization in Biology and Medicine, Wisconsin Institutes for Discovery, New Stochastic Programming Approaches for Radiation Therapy Planning

UW Alum Speaker: Michael Molla, PhD, Director of Bioinformatics, Joslin Diabetes Center, Harvard Medical School; member, Harvard Medical School Faculty, Computational Analysis of Biomedical Data

[2009]

Keynote Speaker: David Lipman, MD, Director, National Center for Biotechnology, Computing Discoveries in Biology at NCBI

UW Faculty Speaker: Sangtae Kim, PhD, Executive Director, Morgridge Institute for Research, Madison WI, Strategic Vision for the Morgridge Institute for Research

UW Alum Speaker: Vasant Honavar, PhD, Professor of Computer Science; Bioinformatics and Computational Biology Program; Center for Computational Intelligence, Learning, and Discovery, Iowa State University, From Sequence Annotation to Network Alignment

[2008]

Keynote Speaker: Giulio Tononi, MD, PhD, Professor, Department of Psychiatry, University of Wisconsin-Madison, An Integrated Information Theory of Consciousness

UW Faculty Speaker: Fred Blattner, PhD, Oliver Smithies Professor of Genetics, University of Wisconsin-Madison, I Was Writing a Bioinformatics Program When JFK Was Assassinated

UW Alum Speaker: Christopher Rao, PhD, Assistant Professor, Department of Chemical & Biomedical Engineering, University of Illinois at Urbana-Champaign, Dynamics and Regulation of Bacterial Gene Circuits

[2007]

Keynote Speaker: Shankar Subramaniam, PhD, Professor of Bioengineering and Chemistry and Biochemistry, University of Calilfornia, San Diego, The Fat Story  Prometheus Revisited!

UW Faculty Speaker: P. Justin Starren, MD, PhD, Director, Biomedical Informatics Research Center, Marshfield Clinic Research Foundation and Visiting Faculty, Department of Biostatistics and Medical Informatics, University of Wisconsin-Madison, Clinical Informatics Outside the Clinic

UW and CIBM Alum Speaker: Joseph Bockhorst, PhD, Assistant Professor, Department of Electrical Engineering and Computer Science, University of Wisconsin-Milwaukee, Learning the Structure of Probabilistic Sequence Models - Applications to Vaccine Design

[2006]

Keynote Speaker: Jill Mesirov, PhD, Director, Computational Biology and Bioinformatics, Broad Institute, Gene Expression Analysis: A Knowledge-Based Approach

UW Faculty Speaker: Michael Newton, PhD, Professor of Biostatistics and Medical Informatics and of Statistics, UW-Madison, Problems And Solutions In Gene Set Enrichment Analysis

UW Alum Speaker: Lingchong You, PhD , Assistant Professor, Department of Biomedical Engineering, Duke University, Biology by Design: Reduction and Synthesis of Cellular Networks

[2005]

Keynote Speaker: CIBM Distinguished Lecturer Daphne Koller, PhD, Associate Professor, Computer Science Department, Stanford University, Modeling Conservation and Variation in Regulatory Networks

UW Faculty Speaker: Frederick W. Kron, MD, Assistant Clinical Professor, Department of Family Medicine, UW-Madison

UW Alum Speaker: Kristin P. Bennett, PhD, Professor, Department of Mathematical Science, Rensselaer Polytechnic Institute

[2004]

Lloyd Smith, PhD, John D. MacArthur Professor, Department of Chemistry; Director, Genome Center of Wisconsin, University of Wisconsin-Madison, DNA Computing on Surface

CIBM Distinguished Lecturer Michael Waterman, PhD, University Professor, Departments of Biological Sciences, Mathematics, and Computer Science, University of Southern California, Algorithms for Haplotype Block Partition

Michael E. Wall, PhD, Computer and Computational Sciences Division and Bioscience Division, Los Alamos National Laboratory, Design Principles of Genetic Regulatory Networks

[2003]

Keynote Speaker: Patricia F. Brennan, PhD, Professor, Departments of Biostatistics and Medical Informatics, Nursing, and Industrial Engineering, University of Wisconsin-Madison, Linking Lay People to the Professional Literature - An Application of Natural Language Processing to Free-Text E-Mail

UW Faculty Speaker: John Yin, PhD, Associate Professor, Department of Chemical and Biological Engineering, University of Wisconsin-Madison, From Genome to Organism: A Virus-world View

UW Bioinformatics Alum Speaker  Lecture by Michael Giddings, PhD, Assistant Professor, Microbiology & Immunology; Biomedical Engineering, University of North Carolina-Chapel Hill, Genome Analysis by Proteomic Methods and Genome Fingerprint Scanning