CIBM SEMINAR
Our seminar is held during the Fall and Spring semester, and all are welcome to attend.
Tuesdays, 4:00 p.m.
Genetics/Biotechnology Center Auditorium, 425 Henry Mall
Jan. 22 Presentation by Wolfgang Gaggl, PhD (Medical College of Wisconsin), Functional MRI, Connectivity, and DTI in Clinical Practice
Jan. 29 Presentation by Pascale Carayon, PhD, Assistant Professor (Biomedical Engineering), Designing Health Information Technology for Clinicians and Patients: A Human Factors Engineering Viewpoint
Feb. 5 Introduction of Participants, Room 1210 Medical Sciences Center, 1300 University Avenue
Feb. 12 Presentation by Catie Vincent, CIBM Predoctoral Trainee (Chemistry), and Nathanael Fillmore, CIBM Predoctoral Trainee (Computer Sciences), The Utilization of Machine Learning for the Prediction of Sequence-Informative Fragment Ions Greatly Improves Peptide Identification by Mass Spectrometry; Evaluation of de novo Transcriptome Assemblies from RNA-Seq Data
Feb. 19 Presentation by Jeremy Weiss, CIBM Predoctoral Trainee (Computer Sciences; Medicine), Statistical Timeline Analysis: Clinical Event Prediction from Electronic Health Records
Feb. 26 Presentation by Nicholas A. Davis (Division of Information Technology, UW-Madison), The Unique Challenges of Information Security in Healthcare Environments
March 5 Presentation by Sriraam Natarajan (Assistant Professor, Translational Sciences Institute, Wake Forest University School of Medicine), Statistical Relational Learning for Predictive Personalized Medicine
March 8 **Note Different Day and Room** 140 Bardeen, 12:00 noon. Presentation by James M. Regh, PhD, Professor (School of Interactive Computing, College of Computing Georgia Institute of Technology), Behavior Imaging and the Study of Autism
March 12 Presentation by Ishmael Amarreh (Dept. of Biomedical Engineering, UW-Madison) Title TBA
March 19 Presentation by Gary Pack, PhD, Semiparametric Geometric Methods for Extracting and Modeling White Matter Volumetric Structures of the Brain
March 26 No seminar - Spring Break
April 2 Presentation by Alan Wolf, PhD (Director, New Media Center Program; collaborator and consultant on technology projects at the Institute for Biology Education), Electronic Laboratory Notebooks: Moving from paper to bytes
April 9 Presentation by Dana Wohlbach, PhD (Assistant Scientist, Genetics, UW-Madison), Comparative Analysis of Multiomics Analysis of Natural Variation in Yeast to Understand Bottlenecks to Bioenergy Production
April 16 Presentation by Dolores Severtson, PhD (Assistant Professor, School of Nursing, UW-Madison), and Jeff Myers (Wisc. Department of Natural Resources), Modeling Estimated Cancer Risk from Air Pollution & Designing Maps to Communicate the Uncertainty of the Modeled Estimates
April 23 Presentation by Jeremy Goecks, PhD (Postdoctoral Researcher, Departments of Biology, and Mathematics & Computer Science), Interactive Computing for High-Performance Medical Genomics
Th., May 2 **Note different day and room ** Presentation by Deborah Estrin (Professor of Computer Science, CornellNYC Tech), CS Building, Room 1240, 4:00 pmSensemaking for Mobile Health
PAST SEMINARS Fall 2012
Sept. 4 Introduction of Participants, Room 117, 445 Henry Mall
Sept. 11 Presentation by Anna Rissman, CIBM Predoctoral Fellow (Department of Genetics) Interpreting Differential Expression Associated with Variants of a Non-Coding Mammary Cancer Susceptibility Locus
Sept. 18 Presentation by John Doyle, Professor of Control and Dynamical Systems, Electrical Engineering, Bioengineering (Caltech), WID Building Forum, Universal Laws and Architectures
Sept. 25 Presentation by Christopher Rao (Associate Professor, Department of Chemical and Biological Engineering, University of Illinois, Champagne-Urbana), 1227 Engineering Hall, Design and Diversity in Bacterial Signaling Networks
Oct. 2 Presentation by Benjamin Mueller, CIBM Predoctoral Fellow (Department of Biochemistry) Modeling C-alpha-H.....O Mediated Transmembrane Dimers
Oct. 16 Presentation by Kevin Ponto, PhD, Assistant Professor (School of Human Ecology, UW-Madison) Rethinking 3D
Oct. 23 Presentation by Maureen Smith, MD, MPH, PhD, Associate Professor (Population Health Sciences, UW School of Medicine and Public Health), Health Services Research: Integrating Clinical, Administrative, and Survey Data for Research on Improving Health Care
Oct. 30 Presentation by Amit Acharya, BDS, MS, PhD, Director, Dental Informatics Postdoctoral Fellowship Program; Dental Informatics Research and Training Program, Biomedical Informatics Research Center (Marshfield Clinic Research Foundation), Computation and Informatics in Dentistry: A Specialized Area of Research Focus!
Nov. 6 Presentation by Takeo Kanade, Professor (Robotics Institute, Carnegie Mellon University), Rm. 1240 Computer Science Building, First-Person Vision
Nov. 13 Presentation by Chris Hinrichs (Department of Computer Sciences, How Machine Learning Methods Can Reshape Neuroimaging-Based Clinical Trials
Nov. 20 Presentation by David Devilbiss, PhD, Assistant Scientist (Department of Psychology, UW-Madison), Lost Moments in Time: The Effects of Stress on PFC Neural Coding
Nov. 30 Presentation by Christina Leslie, PhD (Computational Biology Program, Memorial Sloan Kettering Cancer Center), 12:00 Noon, Room 140 Bardeen, Deciphering co- and post-transcriptional regulatory programs in normal and cancer cells
Dec. 4 Presentation by Murray Brilliant, PhD, Director at the Center for Human Genetics (Marshfield Clinic Research Foundation), Personalized Medicine at the Marshfield Clinic: Research and Implementation
PAST SEMINARS Spring 2012
Jan. 24 Introduction of Participants, Room 1360 Biotechnology Center
Jan. 31 Presentation by Kyle Hoffman (Chemical and Biological Engineering), The Interaction of Islet Amyloid Polypeptide with Phospholipid Bilayers and Micelles
Feb. 7 Presentation by Moo K. Chung, PhD (Associate Professor, Department of Biostatistics & Medical Informatics) Persistent Homology and Its Application to Characterizing Abnormal Brain Cortical Thickness and Network in Autism
Feb. 14 Presentation by Elizabeth S. Burnside, MD MPh (Associate Professor, Radiology; Biostatistics and Medical Informatics), Using Multi-relational Data and Machine Learning to Improve Breast Cancer Diagnosis
Feb. 21 Presentation by Collin Timm, CIBM Predoctoral Trainee (Chemical and Biological Engineering), Quantitative Transcription and Replication Dynamics of Vesicular Stomatitis Virus – Towards a Predictive Model of Viral Growth
Feb. 28 Presentation by M. Elizabeth Meyerand, PhD (Professor and Chair, Department of Biomedical Engineering), A MRI study of Sustained Neuromodulation Induced by Electrical Tongue Stimulation in Balance Disorders
March 6 Presentation by Gang Luo, PhD (IBM T.J. Watson Research Center), Intelligent Personal Health Records
March 13 Presentation by Sushmita Roy (Assistant Professor, Department of Biostatistics and Medical Informatics, UW-Madison), Computational Approaches to Modeling Gene Regulation in One and Many Species
Fr., March 23 **Note different time and room** 12 pm, 140 Bardeen, 1215 Linden Drive Russell Greiner, Professor (Professor, Department of Computing Science; Center for Machine Learning, University of Alberta), Budgeted Learning Of Effective Classifiers
March 27 Presentation by Kendrick Boyd, CIBM predoctoral fellow (Department of Computer Sciences), Precision-Recall Space and Empirical Algorithm Evaluation
April 3 No seminar, Spring Break
April 10 Presentation by Deborah Muganda, CIBM predoctoral fellow (Department of Computer Sciences), Computing Clustered Alignments of Gene-Expression Time Series
April 17 Presentation by Garret Suen (Assistant Professor, Department of Bacteriology, UW-Madison) How Much Cow is in it? The Systems Biology of the Rumen Ecosystem
April 24 Presentation by Deborah Chasman (Department of Computer Sciences) Inferring Host Subnetworks involved in Viral Replication
May 1 Presentation by Brian Teague (Laboratory for Molecular and Computational Genomics), Title TBA
PAST SEMINARS Fall 2011
Sept. 6 Introduction of Participants, Room 1360 Biotechnology Center
Sept. 13 Presentation by Carolyn Pehlke, CIBM Predoctoral Trainee (Biomedical Engineering), Quantitation of Collagen Alignment: Tools for Characterizing Cancer Progression and Invasion
Sept. 20 Presentation by Sabareesh Subramaniam (Biochemistry), Efficient Conformer Libraries to Improve Protein Sidechain Optimization
Sept. 27 Presentation by Shane Hubler, PhD, CIBM Postdoctoral Trainee (Chemistry) The Effects of Stress on Translation – A Systems Approach
Oct. 4 No seminar – CIBM Retreat is Fri., Oct. 7th
Oct. 11 Presentation by Kevin Ponto, PhD, CIBM Postdoctoral Trainee (Computer Sciences), Effective Replays and Summarization of Virtual Experiences
Oct. 18 Presentation by Laurence Loewe, PhD, Assistant Professor (Genetics; Systems Biology, Wisconsin Inst. for Discovery), Computational Approaches to understanding Distributions of Mutational Effects
Oct. 25 Presentation by Maxwell Collins (Computer Sciences), Cosegmentation in Neuroimaging, and Nathanael Fillmore (Computer Sciences), A Model for Progression and Gene Expression in Cervical Cancer
Fri., Nov. 4 Presentation by Patricia Brennan, PhD (Professor, Dept. of Industrial & Systems Engineering; School of Nursing; Theme Leader, Living Environments Laboratory, Wisconsin Institute for Discovery), 12:00 pm, 3280 Wisconsin Institutes of Discovery, 330 N. Orchard St., The Living Environments Laboratory at the Wisconsin Institutes of Discovery
Nov. 8 Presentation by Costas D. Maranas (Professor, Department of Chemical Engineering, Penn State), 1800 Engineering Hall, 1415 Engineering Dr. Using Computations to Reconstruct, Analyze and Redesign Metabolism
Nov. 15 Presentation by Laura LeGault (Computer Sciences), Inference of Alternative Splicing from RNA-Seq Data with Probabilistic Splice Graphs
Nov. 22 Cancelled: Presentation by David Baumler, PhD, CIBM Postdoctoral Fellow (Genome Center of Wisconsin), Systems Biology: Investigating Modern-Day Disease by Using Metabolic Models of Bacteria from the Past
Nov. 29 Presentation by Kevin Eng, PhD, CIBM Postdoctoral Fellow (Biostatistics & Medical Informatics) Exploratory Genomic Analysis and Modeling of Ovarian Carcinoma
Dec. 6 Presentation by David J. Baumler, PhD, CIBM Postdoctoral Fellow, Genome Center of Wisconsin, Investigating Modern-Day Disease by Using Metabolic Models of Bacteria from the Past
PAST SEMINARS Spring 2011
Jan. 25 Presentation by Houssam Nassif (Computer Sciences), Characterizing and Predicting Hexose-Binding Sites
Feb. 1 Presentation by Kaitlin Sundling (Biophysics), Analysis of GTP Biosynthetic Gene IMD2 Expression In Yeast
Mo., Feb. 7 3:30 pm Ebling Symposium Center, Microbial Sciences Building, 1550 Linden Dr., Presentation by Abbas Ourmazd (Distinguished Professor of Physics & Electrical Engineering, UW-Milwaukee), Biostructure and Dynamics from Random Snapshots
Feb. 15 Presentation by Nathan Miller (Assistant Scientist, Botany), Data Modeling Root Gravitropism
Feb. 22 Presentation by Ryan Haasl (Genetics), Computer Experiments with Microsatellites
Th., March 3rd, Fri., March 4th Presentation by Tom Mitchell (Fredkin Professor of AI and Learning Machine Learning Department, Carnegie Mellon University), Never-Ending Learning, Neural Representations of Word Meanings
March 8 Presentation by Darryl Thelen (Associate Professor, Depts. of Mechanical Engineering; Biomedical Engineering; UW-Madison), Computational Biomechanics
March 22 Presentation by Qiuling He (Statistsics) How Many Human Genes Participate in Influenza Virus Replication
Th., March 31st, 4:00 pm, 1240 CS; Fri., April 1st 11:00 am 1240 CS Presentation by Eric Horvitz (Distinguished Scientist, Micrond Evidence-Based Healthcare (April 1st)
April 5 Presentation by Jie Liang (Professor of Bioengineering, Univ. of Illinois, Chicago) Multi-Scale Computational Study of Biological Systems: Protein Structure, Function, Assemblies, Networks, and Cells
April 12 Presentation by Bo Li (Computer Sciences)) RSEM: Accurate Quantification of Gene and Isoform Expression from RNA-Seq Data
April 19 Presentation by Corinne Engelman (Ass’t. Prof., Population Health Sciences, UW Madison) Unraveling the Environmental and Genetic Predictors of Vitamin D
April 26 Presentation by Tim Patton, CIBM Predoctoral Fellow (Industrial & Systems Engineering)) Towards Cognitive Support for Health Self-management: Representing Knowledge of Health in Everyday Living
PAST SEMINARS Fall 2010
Sept. 14 Presentation by Nagesh Adluru, PhD (Biostatistics & Medical Informatics), Techniques for Mapping Brain Connectivity using Diffusion MRI
Sept. 21 Presentation by Bing Ma (Comparative Biomedical Sciences Program), Genomic Approaches to Understanding the Evolution of Host-Microbe Interactions
Sept. 28 Presentation by Bess Berg, CIBM Predoctoral Trainee (Computer Sciences) Learning Predictive Rules from Electronic Health Records
Oct. 8 12:00 noon, 140 Bardeen Medical Laboratories, 1215 Linden Drive, Presentation by Eric A. Stone, PhD (Assistant Professor, Bioinformatics Research Center, Department of Genetics, North Carolina State University), Next-generation Genotyping for Next-generation Sequencing
Oct. 12 No seminar – CIBM Retreat is Fri., Oct. 15th
Oct. 19 Presentation by Ameet Soni (Computer Sciences), Improved Statistical Inference for Protein-Structure Determination
Oct. 26 Presentation by Chris Hinrichs, CIBM Predoctoral Trainee (Computer Sciences), Learning to Recognize Disease Patterns in Medical Imaging: Applications to Alzheimer's Disease Research
Nov. 5 1:30 pm, Biotechnology Center Auditorium, Presentation by Dmitry Kondrashov, PhD (Senior Lecturer, University of Chicago Biological Sciences Collegiate Division), A Multi-Dimensional Approach to Teaching Mathematics for Biologists
Nov. 9 Presentation by David Baumler, PhD, CIBM Postdoctoral Trainee (Genome Center of Wisconsin)The Evolution of Metabolic Networks of E. coli
Nov. 16 Presentation by Ron Stewart, PhD (Morgridge Institute for Research)RNA-Seq Analysis of the Axolotl Adult Limb and Blastema - Cues and Clues to Regeneration
Nov. 23 Presentation by Barry D. Van Veen, PhD (Professor, Electrical and Computer Engineering) EEG/MEG Estimation of Cortical Effective Connectivity
Nov. 30 Presentation by Casian Pantea, PhD (Departments of Mathematics; Biomolecular Chemistry) Computational Methods for Analyzing Bistability in Biochemical Reaction Networks
Dec. 7 Presentation by David Anderson, PhD (Assistant Professor, Department of Mathematics) Stochastic Models in Biology
Past CIBM Seminar presenters are listed below with the seminar title, their name and affiliation in parenthesis, if it is not UW-Madison, and their area of specialization.
A Bayesian Network to Improve Early Detection of Breast Cancer | Elizabeth Burnside | Radiology; Biostatistics and Medical Informatics
A New DNA Word Design Strategy Using Random de Bruijn Sequences | Christine Heitsch | Math and Chemistry
A Reductionist Approach to E. coli Functional Genomics | Fred Blattner | Genetics
A Single Fluorochrome System for Genomic Analysis | Dalia Dhingra | Chemistry
A Species-Generalized Probabilistic Model-Based Definition of CpG Islands | Rafael Irizarry (Johns Hopkins University) | Biostatistics
A Statistical Framework for the Analysis of ChIP Seq Data | Pei Fen Kuan | Biostatistics and Medical Informatics
A Unified Approach to Discovery and Classification of Tumor Types using Gene Expression Data | Roxana Alexandridis | Bacteriology
Adaptive High-Throughput Peptide Screening and Analysis via Active Learning | Burr Settles | Biostatistics and Medical Informatics
Advanced Nonlinear Programming Methods for Chemical Process Optimization | Lorenz Biegler (Carnegie Mellon University) | Chemical Engineering
An Abductive Approach to Explaining Genome-Wide Experimental Observations | Deborah Chasman | Computer Sciences
An Automated Decision -Tree Approach to Predicting Protein Interaction Hot Spots | Steve Darnell | Biochemistry
An Integrated Computational and Biophysical Approach to the Structural Study of Integral Membrane Proteins | Alessandro Senes | Biochemistry
Analysis of Gene Copy Number Abnormalities in Cancer: Computational Challenges | Dimitri Semizarov (Abbott Laboratories) | Global Pharmaceutical Research and Development
Analysis of Intracellular Signal Transduction at Various Scales of Biological Complexity | Jason Haugh (North Carolina State University) | Chemical Engineering
Application of the Gaussian Network Model and a Variation of Normal Mode Analysis for Refinement of Protein Structures | Ryan Bannen | Biochemistry
Aquaporin Water Channels from Atomic Structure to Malaria | Peter Agre (Director, Johns Hopkins Malaria Research Institute) | Medicine
ASAP, Community Annotation and Analysis of Genomes | Nicole Perna | Animal Health; Biomedical Sciences; Genome Center
Better Living Through Design: Visualizing Biomedical Data for Patient Care, Public Health, and Research | David Pieczkiewicz (Marshfield Clinic Research Foundation) | Biomedical Engineering
Bio-electronic Interfaces for Direct Electronic Sensing | Robert Hamers | Chemistry
Biophysical and Computational Studies of Virus Particles and their Maturation: Insights into Elegantly Programmed Nano-machines | John E. Johnson (The Scripps Research Institutte) | Molecular Biology
Cancer Genomics: Discovery and Characterization of Structural Alterations in the Solid Tumor Oligodendroglioma via Single Molecule Analysis | Nicholas Shera | Laboratory for Molecular and Computational Genomics
Case Studies in Bayesian Phylogenetics | Bret Larget | Statistics; Botany
Clinical Decision Support, Medical Knowledge Representation and Workflow Technology (A Seminar in Clinical Informatics: A Subfield of Biomedical Informatics) | Vojtech Huser (Marshfield Clinic Research Foundation) | Biostatistics and Medical Informatics
Cognate Site Identifier (CSI) Array: A High-Throughput Technique to Determine the Comprehensive Sequence Specificity of DNA- Binding Molecules | Chris Warren | Biochemistry
Comparative Genomics of the Environmental Stress Response in Ascomycete fungi | Dana Wohlbach | Genetics
Computational and Experimental Models for Macromolecular Recognition | Lynn Ten Eyck (University of California-San Diego, San Diego Supercomputer Center) | Pharmacology; Computational Science Research
Computational Challenges in Discovering the Genetic Basis of Complex Traits in Inbred Mouse Strains | Eleazar Eskin (UCLA) | Computer Science; Human Genetics
Computer Simulation of | Daniel McFarlin | Biostatistics and Medical Informatics, and Oncology
Computer Vision Algorithms for Phenotyping the Model Plant Arabidopsis | Nathan Miller | Biomedical Engineering Graduate Program
Computers as Puzzle Solvers: The Challenge of Efficient Search | Richard Karp (University of California- Berkeley) | Computer Sciences
Computing the Conformational Entropy of the Folded and Unfolded Ensembles of a Protein Using Lie Groups | Gregory Chirikjian (Johns Hopkins University) | Computer Sciences
Conformational Flexibility of Proteins in Crystallography and Computational Models | Dmitry Kondrashov | Biochemistry
Conservation and Evolution of Cis-regulatory Elements in Diverse Fungi | Audrey Gasch | Genetics; Genome Center
Control of Global Transcription in Escherichia coli | Timothy Durfee | Genetics
Counting Peptides | Shane Hubler | Mathematics
Cryptographic Accuracy Annotations for Electronically Exchanged Personal Health Information | David Haight | Industrial and Systems Engineering
Data Analysis with Latent Topic Models: Genes, Bugs, and Art | David Andrzejewski | Computer Sciences
De Novo Peptide Sequencing using Tandem Mass Spectrometry Data | Gheorghe Craciun | Mathematics; Biomolecular Chemistry
Design and Evaluation of Double-Stranded DNA Microarrays | Chris Warren | Biochemistry
Designing and Evaluating a Method for Multiple Genome Comparison | Aaron Darling | Computer Sciences
Detecting Messenger and MicroRNA Targeting Relationships from Observational Microarray Data Studies | Stephen Stanhope | Statistics
Development and Applications of Escherichia coli Metabolic Models | Jennifer Reed (University of California-San Diego) | Biomedical Engineering
Development of a SNPChip | Henry Zeringue | Biomedical Engineering
Discovery and Characterization of a Causative Mutation for Bovine Dwarfism in Cyclic GMP-dependant, Type II, Protein Kinase (PRKG2) | James Koltes | Biochemistry
Dissecting the Origins of Emergent Behavior in Populations of Bacteria | Douglas B. Weibel | Biochemistry
Driven Assembly of Nanoscale Objects, and its Application in Nanotechnology | Juan de Pablo | Chemical and Biological Engineering
Efficient Modeling of Solvent Environments | Michael Feig (Michigan State University) | Biochemistry and Molecular Biology; Chemistry
Engineering Added Dimensions into Magnetic Resonance Imaging | Walter Block | Biomedical Engineering and Medical Physics
Engineering the p53 Cancer Prevention Protein using Structure Based Features and Active Learning | Sam Danziger (University of California, Irvine) | Biomedical Engineering
Ensemble Refinement of Protein Crystal Structures: Validation and Application | Elena Levin | Biochemistry
Exploring the Flexibility of DNA with Molecular Dynamics Simulations | Vanessa Ortiz | Chemical and Biological Engineering
Extending Pictorial Structures for the Interpretation of Crystallographic Density Maps | Frank DiMaio | Computer Sciences
Finding Relations in Biomedical Literature Using Inductive Logic Programming | Louis Oliphant | Computer Science
Fractionation in Radiation Treatment Planning | Michael Ferris | Computer Sciences and Industrial Engineering
From Genome to Organism: A Virus-World View | John Yin | Chemical and Biological Engineering
From Sequence Information to Gene Expression | Jun Liu (Harvard University) | Statistics
Gene Mapping in the Post-Genomic Era | Brian Yandell | Statistics; Horticulture
Genetic Maps: Past, Present, and Future | Karl Broman | Biostatistics and Medical Informatics; Genetics
Genome Analysis by Proteomic Methods and Genome Fingerprint Scanning | Michael Giddings (University of North Carolina-Chapel Hill) | Microbiology and Immunology; Biomedical Engineering
Genome-Wide Analysis of Histone Gene Promoters | Ragesh Chowhardy (Marshfield Clinic Research Foundation) | Biomedical Engineering
Genomic Network Tomography | Robert Nowak | Electrical and Computer Engineering
Geovisualization and Public Health Informatics: Tools to Inform Decisions | Lori Severtson | School of Nursing
Gleaning Relational Information from Biomedical Text | Mark Goadrich | Computer Sciences
HAMLET (Human, Animal, and Machine Learning: Experiment and Theory) | Jerry Zhu | Computer Sciences
High Throughput Microfluidics for Biological Assays | Jay Warrick | Biomedical Engineering
Human Genome Structural Polymorphism Discovery Using Optical Mapping (B. Teague);Enhancing Arrayed Micro-Culture Experiments using Microfluidics and Java (J. Warrick) | Brian Teague; Jay Warrick | Biomedical Engineering
Identification of Genes Common to Multiple Diseases | Craig A. Struble (Marquette University) | Mathematics, Statistics and Computer Science
Identifying Human Genomic Variation By Optical Mapping | Steve Goldstein | Biotechnology Center
Image Informatics for Multidimensional Light Microscopy | Kevin Elicieri | Laboratory for Optical and Computational Instrumentation
Image-Based Analysis of the Topology and Morphology of Diseased Lungs | William Mullally (Boston University) | Computer Science
Imaging and Visualizing Micro- Vascular Architectures | Michael Gleicher and Garet Lahvis | Computer Sciences; Surgery
Information Topology in Computational Biology | Amir Assadi | Mathematics
Integrating Molecular Markers for Association Studies of Complex Disease | Bret Payseur | Genetics
Interpretation of Molecular Dynamics through Diffuse X-ray Scattering | Jason McCoy | Biochemistry
Inverse Parametric Alignment for Accurate Biological Sequence Comparison | Eagu Kim | Biostatistics and Medical Informatics
Investigations of Brain Connectivity Using Diffusion-Tensor MRI | Andrew Alexander | Medical Physics
Learning Classifiers for Non- IID Data: Applications to Computer Aided Diagnosis (CAD) Problems | Glenn Fung (Siemens Medical Solutions USA) | Biomedical Engineering
Learning Ensembles of First- Order Clauses for Recall- Precision Curves: A Case Study in Biomedical Information Extraction | Mark Goadrich | Computer Sciences
Learning Models of cis-Regulatory Modules from Sequence Data | Keith Noto | Computer Sciences
Learning Regulatory Network Models that Represent Regulator States and Roles | Keith Noto | Computer Sciences
Learning Semantic Indicators for Information Extraction | Burr Settles | Computer Sciences
Linking Lay People to the Professional Literature: An Application of Natural Language Processing to Free-Text E-Mail | Patricia Brennan | Biostatistics; Medical Informatics; Nursing; Industrial Engineering
Many Low-Barrier Local Motions Cooperate to Produce the Adenylate Kinase Conformational Transition | Michael Daily | Chemistry
Medical Informatics within a Population Health Context: Building Wisconsin's Strategic Framework | Larry Hanrahan, (Chief, Bureau of Health Information and Policy, Division of Public Health, Health, and Family Services) | Epidemiologist
Mining the Protein Data Bank and TargetDB with a Structural Genomics Focus | Ryan Bannen | Biochemistry
Modeling Gene Regulatory Pathways | Irene Ong | Computer Sciences
Modeling HIV Adaptation for Improved Vaccine Design | Eric Lantz | Computer Sciences
Modeling Patterns in Single- Nucleotide Polymorphism Data for Predicting Cancer Susceptibility: A Case Study in Multiple Myelomas | Michael Waddell | Computer Sciences
Modeling the Regulation of Ribosomal Synthesis: In vivo Insights from in vitro Data | Patrick Suthers | Chemical and Biol Eng
Modern Machine Learning for the Biostatistical Masses | Michael Coen | Biostatistics and Medical Informatics; Computer Sciences
Modular Biology: The Function and Evolution of Regulatory Networks | Aviv Regev (MIT; Broad Institute) | Biology
Molecular Simulations of Mechanochemical Coupling in Myosin | Qiang Cui | Chemistry
Monitoring Bacterial Protein Turnover at a Proteomic Scale Using Metabolic Labeling and the AMT Approach | Ed Huttlin | Biochemistry
Multi-Chamber Platform for the Study of Interactions between Cancer Cells and the Surrounding Microenvironment | Maribella Domenech | Biomedical Engineering
Multi-Level Dynamics of Viral Infections | Eric Haseltine | Chemical and Biological Engineering
Multi-Scale Perspectives of DNA Sequence | Wilma Olson (Rutgers University) | Chemistry
Multiscale Surface Techniques: Labeling and Matching the Protein Surface | Greg Cipriano | Computer Sciences
Multivariate Segmentation in the Analysis of Transcription Tiling Array Data | Antonio Piccolboni, Affymetrix | Genetics
New Computational Methods in NMR | Hamid Eghbalnia | Biochemistry
On the Complexity of the Human Genome: New Insights from the ENCODE Project | Colin Dewey | Biostatistics and Medical Informatics
On the Subspecific Origin of the Laboratory Mouse | Gary Churchill (The Jackson Laboratory) | Biology
Optical Mapping: The Human Genome Under the Microscope | Brian Teague | Laboratory for Molecular and Computational Genomics
Optimization and Evaluation of Simple Models of Protein Motion Using X-ray Crystal Data | Dmitry Kondrashov | Biochemistry
Our Genomic Future | Craig Venter (President of the Center for the Advancement of Genomics) | Genomics
Personal Genome and Synthetic Biology Projects | George Church (Harvard Medical School) | Medicine
PQR Trees and DNA Physical Mapping | Joao Meidanis (Institute of Computing, UNICAMP, Campinas, Brazil) | Bioinformatics
Predicting Bacterial Transcription Units Using Sequence and Expression Data | Joseph Bockhorst | Computer Sciences
Predicting Protein Interactions using the Docking Mesh Evaluator (DoME) | Roummel Marcia | Biochemistry
Privacy Issues in the Implementation of Electronic Health Records | David Haight | Industrial Engineering
Protein Recognition in Electron-Density Maps using Spherical- Harmonic Decompositions | Ameet Soni | Computer Sciences
Proteins, The Unfolding Story | George Rose (Johns Hopkins University) | Biochemistry
Proteomics, Ovarian Cancer, and Experimental Design | Keith A. Baggerly (Anderson Cancer) | Biostatistics and Applied Mathematics
Public Health Communication and the Potential Power of Informatics Tools | Lori Severtson | School of Nursing
Quantitative proteomics | Ruedi Aebersold (Institute for Systems Biology, Affiliate University of Washington) | Systems Biology
Quantitative Studies of Bacterial Gene Regulation | Terence Hwa (University of California-San Diego) | Center for Theoretical Biological Physics
Question Answering Systems for Physicians and Biomedical Researchers | Hong Yu (UW-Milwaukee) | Health Sciences
Rapid Magnetic Resonance Imaging (MRI): Using Numerical Methods to Move from Anatomy to Physiological Function | Walter Block | Biomedical Engineering
Realistic Simulation of Biological Macromolecules in Solution | David A. C. Beck (University of Washington) | Biochemistry
Recent Usability Studies at Marshfield Clinic | David Pieczkiewicz (Marshfield Clinic Research Foundation) | Medicine
Recursive Motifs in Metabolic Networks | Sarah Cunningham | Biophysics
Selecting the Statistical Analysis Based on the Research Question | David DeMets | Biostatistics and Medical Informatics
Self-Tuning Method for One- Chip SNP Identification | Michael Molla | Computer Sciences
Semiparametric Kernel Methods for Constructing Structural Connectivity Networks in Diffusion Tensor MRI | Gary Pack | Computer Sciences
Similarity Queries for Temporal Toxicogenomic Expression Profiles | Adam Smith | Computer Sciences
Site Selective Adsorption of DNA Nanostructures on Lithographically Patterned Substrates | Ryan J. Kershner | Mechanical Engineering
Some Aggregation Problems in Clustering and Structural Graphs | Vikas Singh | Biostatistics and Medical Informatics
Statistical Methods for the Design and Analysis of Microarray Experiments | Christiana Kendziorski | Biostatistics and Medical Informatics
Statistical Model Enhancements for Motif Finding | Sunduz Keles | Statistics; Biostatistics and Medical Informatics
Structural Genomics Wisconsin-Style | George Phillips | Biochemistry
Symmetric Image Normalization in the Space of Diffeomorphisms | James Gee (University Pennsylvania) | Radiologic Science and Computer and Information Science
Systematic Analysis of Motions and Communication Networks in a Benchmark Set of Allosteric Proteins | Michael Daily | Chemistry
Systems Biology Analysis of Signaling in Cancer: Extension to ER Cross-talk | Pamela Kreeger | Biomedical Engineering
Systems Biology of Receptor Tyrosine Kinase Signaling: Can We Navigate | Boris Kholodenko (Thomas Jefferson University) | Biology
Techniques for Extracting Contours and Merging Maps | Nagesh Adluru | Biostatistics and Medical Informatics
Temporal Discrimination of Microarray Data for Toxicogenomics | Adam Smith | Computer Sciences
The Condor View of Grid Computing | Miron Livny | Computer Sciences
The Genetics of Speciation among Three Subspecies of House Mice | Michael White | Genetics
The Genome Alignment Problem | Colin Dewey | Biostatistics and Medical Informatics
The Robot Scientist Project | Ross King (The University of Wales) | Computer Sciences
The Spectrum and Integration of Biomedical Ontologies | Christopher Chute (Mayo Clinic) | Medical Informatics
There's No Place like 'Ome | Mark Boguski (University of Washington- Seattle) | Biochemistry
Tools for Understanding Protein Structure and Functional Studies | Aaron Bryden | Computer Sciences
Towards Scalable Biological Data Management | Jignesh Patel | Computer Sciences
Transport and Collective Dynamics in Suspensions of Swimming Microorganisms | Michael Graham | Chemical and Biological Engineering
Using Dynamic Programming to Annotate Mass Spectra | Sean McIlwain | Computer Sciences Department
Using Mathematical Tools to Gain Insight into Binding Specificity in Protein-Protein and Protein-DNA Interactions | Julie Mitchell | Biochemistry; Mathematics
Using NMR Data for Biological Investigations: Toward a Probabilistic Approach | Hamid Eghbalnia | Biochemistry
Using Proteomics for Diagnosis | Sean McIlwain | Computer Sciences
Violating Bar Coded Medication Administration Safety Protocols | Ben- Tzion Karsh | Industrial and Systems Engineering
Visual Insights for Computational Biology | Amitabh Varshney (University of Maryland, College Park) | CMB Program
WUN Bioinformatics Video Seminar: The Proteome and the Metabolome | Janet Thorton (Director of European Bioinformatics Institute) | Bioinformatics
XIOS: A Graph-Theoretical Approach to Identifying Conserved RNA Structures | Michael Gribskov (Purdue University) | Biological Sciences
X-ray Crystallography: It's Not Just about Structure Anymore | Demian Riccardi | Biochemistry