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 Graduate Training in Computation and Informatics in Biology and Medicine at the University of Wisconsin-Madison
Computation and Informatics in Biology and Medicine
  Home  >  People  >  Predoctoral Trainees   >  Aaron Darling Program Details

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Predoctoral Trainee

Kendrick Boyd

Computer Sciences Graduate Program

Advisor: David Page

Email: boyd@cs.wisc.edu

262-6600

Statistical Relational Learning is proving to be a useful method of applying machine learning techniques to structured data residing in multiple tables such as that involved in medical diagnosis and prediction from clinical data. With the increasing availability of genetic information, methods must be found to integrate both the clinical and genetic data into the models. Davis et al (2008) used Marshfield clinical data and a learning technique called SAYU that lends itself to multi-table data to predict adverse drug
reactions. SAYU uses Alelph, an inductive logic programming (ILP) system to find potential clauses and then checks if those clauses should be added as variables to a Tree Augmented Naïve Bayes (TAN) model.
 
I will investigate whether more expressive Bayesian network structures and alternative rule searches during ILP can improve model accuracy for the SAYU model.  An extension of TAN would allow a much wider variety of Bayesian networks to be considered, potentially improving the models generated. On the ILP side, I will investigate using other methods of generating clauses than Aleph.

CV

2009 CV (.pdf format)

 

 

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